genome-nexus

by genome-nexus

GitHub Readme.md

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Genome Nexus

Genome Nexus, a comprehensive one-stop resource for fast, automated and high-throughput annotation and interpretation of genetic variants in cancer. Genome Nexus will integrate information from a variety of existing resources, including databases that convert DNA changes to protein changes, predict the functional effects of protein mutations, and contain information about mutation frequencies, gene function, variant effects, and clinical actionability.

Three goals:

  1. Data collection from various annotation sources
  2. Integration of heterogeneous information into a harmonized structure and programmatic interface
  3. Dissemination of the diverse information in a hierarchical digestible way for interpreting variants and patients.

Run

mvn clean install
java -jar web/target/web-*.war

Data Download

If you need to update the included date files see data/README.md